Rare events and saddle point algorithm
Computational systems biology
Computational materials science
Scientific computing
Newton Advanced Fellowship, Royal Society of UK & National Natural Science Foundation of China (NSFC) , 2018-2021
Royal Society of UK & NSFC 11861130351:Solution Landscapes in the Landau-de Gennes theory for Nematic Liquid Crystals, Principle Investigator
NSFC Excellent Youth Award, 2017-2019,
NSFC 11622102:Numerical Methods and Applications for Rare Events and Saddle Points,Principle Investigator
NSFC Major Project Program, 2015-2018,
NSFC 91430217: Computable Models of Biological Networks, Co-Principle Investigator
NSFC A3 Foresight Program, 2014-2019,
NSFC 1421110001: Modeling and Simulation of Hierarchical and Heterogeneous Flow Systems with Applications to Materials Science, Co-Principle Investigator
1. Lingxia Qiao#, Wei Zhao#, Chao Tang*, Qing Nie*, Lei Zhang*, Network design principle for dual function of adaptation and noise attenuation, submitted.
2. Yucen Han, Yucheng Hu*, Pingwen Zhang*, Lei Zhang*, Transition Pathways between Defect Patterns in Confined Nematic Liquid Crystals, submitted.
3. Chunhe Li*, Lei Zhang*,Qing Nie*, Landscape reveals the underlying mechanisms for sharpening the gene expression boundaries, BMC Systems Biology 12:67, 2018.
4. Lina Meinecke, Praveer Sharma, Huijing Du, Lei Zhang, Qing Nie*, Thomas Schilling*, Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch, PLoS Comput Biol 14(11): e1006569, 2018.
5. Boyan Li, Lei Zhang*, Chengliang Li, Qiulin Li, Jun Chen, Guogang Shu, Yuqing Weng, Ben Xu, Shenyang Hu*, Wei Liu*, Phase Field Simulation of Critical Nuclei and Minimum Energy Paths of Cu/Mn/Ni Precipitates in Fe-Cu-Mn (Ni) Alloys, Journal of Nuclear Materials 507, 59-67, 2018.
6. Peijia Yu, Qing Nie*, Chao Tang*, Lei Zhang*, Nanog induced intermediate state in regulating stem cell differentiation and reprogramming, BMC Systems Biology 12:22, 2018.
7. Bihai Shi#, Xiaolu Guo#, Ying Wang, Ken-ichiro Hayashi, Jinzhi Lei, Lei Zhang*, Yuling Jiao*, Feedback from Lateral Organs Controls Shoot Apical Meristem Growth by Modulating Auxin Transport, Developmental Cell, 44, 204-216, 2018.
8. Boyan Li, Lei Zhang*, Chengliang Li, Shenyang Hu, Qiulin Li, Jun Chen, Guogang Shu, Yuqing Weng, Ben Xu*, Wei Liu*, Finding Non-Classical Critical Nuclei and Minimum Energy Path of Cu Precipitates in Fe-Cu Alloys, Modelling Simul. Mater. Sci. Eng. 25 085006, 2017. [pdf]
9. Yanru An, Guosheng Xue, Xiaowei Zhou, Weichuan Yu, Toyotaka Ishibashi, Lei Zhang*, Yan Yan*, Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts, Development, 144, 2153-2164, 2017.
10. Weikang Wang#, Kuan Tao#, Jin Wang, Gen Yang, Qi Ouyang, Yugang Wang, Lei Zhang*, Feng Liu*, Exploring the inhibition effect of membrane tension on cell polarization, PLoS Comput Biol 13(1): e1005354. doi:10.1371/ journal.pcbi.1005354, 2017.